:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'expressbetadiversity' .. highlight: bash expressbetadiversity ==================== .. conda:recipe:: expressbetadiversity :replaces_section_title: :noindex: Taxon\- and phylogenetic\-based beta diversity measures. :homepage: https://github.com/dparks1134/ExpressBetaDiversity :license: GPL3 / GPL-3 :recipe: /`expressbetadiversity `_/`meta.yaml `_ :links: doi: :doi:`10.1038/ismej.2012.88` Taxon\- and phylogenetic\-based beta diversity measures. .. conda:package:: expressbetadiversity |downloads_expressbetadiversity| |docker_expressbetadiversity| :versions: ``1.0.10-5``,  ``1.0.10-4``,  ``1.0.10-3``,  ``1.0.10-2``,  ``1.0.10-1``,  ``1.0.10-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends matplotlib-base: :depends numpy: :depends python: ``>=3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install expressbetadiversity and update with:: mamba update expressbetadiversity To create a new environment, run:: mamba create --name myenvname expressbetadiversity with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/expressbetadiversity: (see `expressbetadiversity/tags`_ for valid values for ````) .. |downloads_expressbetadiversity| image:: https://img.shields.io/conda/dn/bioconda/expressbetadiversity.svg?style=flat :target: https://anaconda.org/bioconda/expressbetadiversity :alt: (downloads) .. |docker_expressbetadiversity| image:: https://quay.io/repository/biocontainers/expressbetadiversity/status :target: https://quay.io/repository/biocontainers/expressbetadiversity .. _`expressbetadiversity/tags`: https://quay.io/repository/biocontainers/expressbetadiversity?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/expressbetadiversity/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/expressbetadiversity/README.html