:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fanc' .. highlight: bash fanc ==== .. conda:recipe:: fanc :replaces_section_title: :noindex: Framework for the ANalysis of C\-data. :homepage: https://github.com/vaquerizaslab/fanc :documentation: https://vaquerizaslab.github.io/fanc :license: ACADEMIC PUBLIC LICENSE (FAN-C) :recipe: /`fanc `_/`meta.yaml `_ .. conda:package:: fanc |downloads_fanc| |docker_fanc| :versions: ``0.9.23b-2``,  ``0.9.0-1``,  ``0.9.0-0`` :depends biopython: :depends cooler: ``>=0.8.0`` :depends future: :depends genomic_regions: ``>=0.0.7`` :depends gridmap: ``>=0.14.0`` :depends h5py: :depends intervaltree: :depends libgcc-ng: ``>=10.3.0`` :depends matplotlib-base: :depends msgpack-numpy: ``>=0.4.4.3`` :depends msgpack-python: :depends numpy: ``>=1.16.0`` :depends pandas: ``>=0.15.0`` :depends pillow: :depends progressbar2: :depends pybedtools: :depends pybigwig: :depends pysam: ``>=0.9.1`` :depends pytables: ``>=3.5.1`` :depends python: ``>=3.7,<3.8.0a0`` :depends python_abi: ``3.7.* *_cp37m`` :depends pyyaml: ``>=5.1`` :depends scikit-image: ``>=0.15.0`` :depends scikit-learn: :depends scipy: :depends seaborn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fanc and update with:: mamba update fanc To create a new environment, run:: mamba create --name myenvname fanc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fanc: (see `fanc/tags`_ for valid values for ````) .. |downloads_fanc| image:: https://img.shields.io/conda/dn/bioconda/fanc.svg?style=flat :target: https://anaconda.org/bioconda/fanc :alt: (downloads) .. |docker_fanc| image:: https://quay.io/repository/biocontainers/fanc/status :target: https://quay.io/repository/biocontainers/fanc .. _`fanc/tags`: https://quay.io/repository/biocontainers/fanc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fanc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fanc/README.html