:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'fastp'
.. highlight: bash

fastp
=====

.. conda:recipe:: fastp
   :replaces_section_title:
   :noindex:

   A ultra\-fast FASTQ preprocessor with full features \(QC\/adapters\/trimming\/filtering\/splitting...\)

   :homepage: https://github.com/OpenGene/fastp
   :license: MIT
   :recipe: /`fastp <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/fastp>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/fastp/meta.yaml>`_

   


.. conda:package:: fastp

   |downloads_fastp| |docker_fastp|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>0.23.2-2</code>,  <code>0.23.2-1</code>,  <code>0.23.2-0</code>,  <code>0.23.1-0</code>,  <code>0.23.0-0</code>,  <code>0.22.0-0</code>,  <code>0.20.1-1</code>,  <code>0.20.1-0</code>,  <code>0.20.0-0</code>,  </span></summary>
      

      ``0.23.2-2``,  ``0.23.2-1``,  ``0.23.2-0``,  ``0.23.1-0``,  ``0.23.0-0``,  ``0.22.0-0``,  ``0.20.1-1``,  ``0.20.1-0``,  ``0.20.0-0``,  ``0.19.7-0``,  ``0.19.6-0``,  ``0.19.5-0``,  ``0.19.4-0``,  ``0.19.3-0``,  ``0.18.0-0``,  ``0.17.1-0``,  ``0.17.0-0``,  ``0.14.1-0``,  ``0.13.1-0``,  ``0.12.5-0``,  ``0.12.4-0``,  ``0.12.3-0``,  ``0.12.2-1``,  ``0.12.2-0``

      
      .. raw:: html

         </details>
      

   
   :depends isa-l: 
   :depends libdeflate: ``>=1.10,<1.11.0a0``
   :depends libgcc-ng: ``>=10.3.0``
   :depends libstdcxx-ng: ``>=10.3.0``
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install fastp

   and update with::

      conda update fastp

   or use the docker container::

      docker pull quay.io/biocontainers/fastp:<tag>

   (see `fastp/tags`_ for valid values for ``<tag>``)


.. |downloads_fastp| image:: https://img.shields.io/conda/dn/bioconda/fastp.svg?style=flat
   :target: https://anaconda.org/bioconda/fastp
   :alt:   (downloads)
.. |docker_fastp| image:: https://quay.io/repository/biocontainers/fastp/status
   :target: https://quay.io/repository/biocontainers/fastp
.. _`fastp/tags`: https://quay.io/repository/biocontainers/fastp?tab=tags


.. raw:: html

    <script>
        var package = "fastp";
        var versions = ["0.23.2","0.23.2","0.23.2","0.23.1","0.23.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fastp/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/fastp/README.html