:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fastphylo' .. highlight: bash fastphylo ========= .. conda:recipe:: fastphylo :replaces_section_title: :noindex: Fastphylo is software project containing the implementations of the algorithms \"Fast Computation of Distance Estimators\" and \"Fast Neighbor Joining\". :homepage: https://github.com/arvestad/FastPhylo :license: MIT :recipe: /`fastphylo `_/`meta.yaml `_ :links: doi: :doi:`10.1186/1471-2105-14-334` .. conda:package:: fastphylo |downloads_fastphylo| |docker_fastphylo| :versions: ``1.0.3-8``,  ``1.0.3-7``,  ``1.0.3-6``,  ``1.0.3-5``,  ``1.0.3-4``,  ``1.0.3-3``,  ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends libxml2: ``>=2.11.4,<2.12.0a0`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends openmpi: ``<4.0.2`` :depends openmpi: ``>=4.0.1,<4.1.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fastphylo and update with:: mamba update fastphylo To create a new environment, run:: mamba create --name myenvname fastphylo with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fastphylo: (see `fastphylo/tags`_ for valid values for ````) .. |downloads_fastphylo| image:: https://img.shields.io/conda/dn/bioconda/fastphylo.svg?style=flat :target: https://anaconda.org/bioconda/fastphylo :alt: (downloads) .. |docker_fastphylo| image:: https://quay.io/repository/biocontainers/fastphylo/status :target: https://quay.io/repository/biocontainers/fastphylo .. _`fastphylo/tags`: https://quay.io/repository/biocontainers/fastphylo?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fastphylo/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fastphylo/README.html