:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fgbio' .. highlight: bash fgbio ===== .. conda:recipe:: fgbio :replaces_section_title: :noindex: A set of tools for working with genomic and high throughput sequencing data\, including UMIs :homepage: https://github.com/fulcrumgenomics/fgbio :license: MIT / MIT :recipe: /`fgbio `_/`meta.yaml `_ .. conda:package:: fgbio |downloads_fgbio| |docker_fgbio| :versions: .. raw:: html
2.2.1-02.2.0-02.1.0-02.0.2-02.0.1-02.0.0-01.5.1-01.5.0-01.4.0-1 ``2.2.1-0``,  ``2.2.0-0``,  ``2.1.0-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``2.0.0-0``,  ``1.5.1-0``,  ``1.5.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.3.0-2``,  ``1.3.0-1``,  ``1.3.0-0``,  ``1.2.0-0``,  ``1.1.0-0``,  ``1.0.0-0``,  ``0.8.1-1``,  ``0.8.1-0``,  ``0.8.0-0``,  ``0.7.0-0``,  ``0.6.1-1``,  ``0.6.1-0``,  ``0.5.0a-0``,  ``0.4.0-1``,  ``0.4.0-0``,  ``0.2.1b-0``,  ``0.2.1a-0``,  ``0.2.0-0``,  ``0.1.5a-0``,  ``0.1.3a-0``,  ``0.1.2a-0`` .. raw:: html
:depends openjdk: ``>=8`` :depends python: :depends r-base: :depends r-ggplot2: :depends r-scales: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fgbio and update with:: mamba update fgbio To create a new environment, run:: mamba create --name myenvname fgbio with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fgbio: (see `fgbio/tags`_ for valid values for ````) .. |downloads_fgbio| image:: https://img.shields.io/conda/dn/bioconda/fgbio.svg?style=flat :target: https://anaconda.org/bioconda/fgbio :alt: (downloads) .. |docker_fgbio| image:: https://quay.io/repository/biocontainers/fgbio/status :target: https://quay.io/repository/biocontainers/fgbio .. _`fgbio/tags`: https://quay.io/repository/biocontainers/fgbio?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fgbio/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fgbio/README.html