:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fgwas' .. highlight: bash fgwas ===== .. conda:recipe:: fgwas :replaces_section_title: :noindex: fgwas is a command line tool for integrating functional genomic information into a genome\-wide association study \(GWAS\). :homepage: https://github.com/joepickrell/fgwas :license: GPL2 :recipe: /`fgwas `_/`meta.yaml `_ .. conda:package:: fgwas |downloads_fgwas| |docker_fgwas| :versions: ``0.3.6-7``,  ``0.3.6-6``,  ``0.3.6-5``,  ``0.3.6-4``,  ``0.3.6-3``,  ``0.3.6-2``,  ``0.3.6-1``,  ``0.3.6-0`` :depends gsl: ``>=2.7,<2.8.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fgwas and update with:: mamba update fgwas To create a new environment, run:: mamba create --name myenvname fgwas with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fgwas: (see `fgwas/tags`_ for valid values for ````) .. |downloads_fgwas| image:: https://img.shields.io/conda/dn/bioconda/fgwas.svg?style=flat :target: https://anaconda.org/bioconda/fgwas :alt: (downloads) .. |docker_fgwas| image:: https://quay.io/repository/biocontainers/fgwas/status :target: https://quay.io/repository/biocontainers/fgwas .. _`fgwas/tags`: https://quay.io/repository/biocontainers/fgwas?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fgwas/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fgwas/README.html