:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fido' .. highlight: bash fido ==== .. conda:recipe:: fido :replaces_section_title: :noindex: A method for protein identification in MS\/MS proteomics. Think of it like a protein delivery dog. You bring it the scored matches between peptides and spectra\, and it fetches a list of proteins ranked by posterior probability by doing clever tricks. :homepage: https://noble.gs.washington.edu/proj/fido/ :license: MIT license :recipe: /`fido `_/`meta.yaml `_ .. conda:package:: fido |downloads_fido| |docker_fido| :versions: ``1.0-6``,  ``1.0-5``,  ``1.0-4``,  ``1.0-3``,  ``1.0-2``,  ``1.0-1``,  ``1.0-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fido and update with:: mamba update fido To create a new environment, run:: mamba create --name myenvname fido with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fido: (see `fido/tags`_ for valid values for ````) .. |downloads_fido| image:: https://img.shields.io/conda/dn/bioconda/fido.svg?style=flat :target: https://anaconda.org/bioconda/fido :alt: (downloads) .. |docker_fido| image:: https://quay.io/repository/biocontainers/fido/status :target: https://quay.io/repository/biocontainers/fido .. _`fido/tags`: https://quay.io/repository/biocontainers/fido?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fido/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fido/README.html