:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'finestructure' .. highlight: bash finestructure ============= .. conda:recipe:: finestructure :replaces_section_title: :noindex: fineSTRUCTURE is a fast and powerful algorithm for identifying population structure using dense sequencing data. :homepage: https://people.maths.bris.ac.uk/~madjl/finestructure/finestructure.html :license: OTHER :recipe: /`finestructure `_/`meta.yaml `_ :links: biotools: :biotools:`fineSTRUCTURE`, doi: :doi:`10.1371/journal.pgen.1002453` .. conda:package:: finestructure |downloads_finestructure| |docker_finestructure| :versions: ``4.1.1-0``,  ``2.1.3-7``,  ``2.1.3-6``,  ``2.1.3-5``,  ``2.1.3-4``,  ``2.1.3-3``,  ``2.1.3-2``,  ``2.1.3-1``,  ``2.1.3-0`` :depends clang: :depends perl: ``>=5.32.1,<6.0a0 *_perl5`` :depends r-ape: :depends r-xml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install finestructure and update with:: mamba update finestructure To create a new environment, run:: mamba create --name myenvname finestructure with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/finestructure: (see `finestructure/tags`_ for valid values for ````) .. |downloads_finestructure| image:: https://img.shields.io/conda/dn/bioconda/finestructure.svg?style=flat :target: https://anaconda.org/bioconda/finestructure :alt: (downloads) .. |docker_finestructure| image:: https://quay.io/repository/biocontainers/finestructure/status :target: https://quay.io/repository/biocontainers/finestructure .. _`finestructure/tags`: https://quay.io/repository/biocontainers/finestructure?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/finestructure/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/finestructure/README.html