:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'flextaxd' .. highlight: bash flextaxd ======== .. conda:recipe:: flextaxd :replaces_section_title: :noindex: Script that allows the creation of custom kraken databases from various sources \(NCBI\, QIIME\, CanSNPer\) :homepage: https://github.com/FOI-Bioinformatics/flextaxd :license: GPL3 / GPLv3 :recipe: /`flextaxd `_/`meta.yaml `_ .. conda:package:: flextaxd |downloads_flextaxd| |docker_flextaxd| :versions: .. raw:: html
0.4.4-00.4.3-00.4.2-00.4.1-00.4.0-00.3.6-00.3.5-00.3.4-00.3.2-0 ``0.4.4-0``,  ``0.4.3-0``,  ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.6-0``,  ``0.3.5-0``,  ``0.3.4-0``,  ``0.3.2-0``,  ``0.3.1-0``,  ``0.3.0-0``,  ``0.2.4-0``,  ``0.2.1-0``,  ``0.2.0-0``,  ``0.1.5-0`` .. raw:: html
:depends python: ``>3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install flextaxd and update with:: mamba update flextaxd To create a new environment, run:: mamba create --name myenvname flextaxd with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/flextaxd: (see `flextaxd/tags`_ for valid values for ````) .. |downloads_flextaxd| image:: https://img.shields.io/conda/dn/bioconda/flextaxd.svg?style=flat :target: https://anaconda.org/bioconda/flextaxd :alt: (downloads) .. |docker_flextaxd| image:: https://quay.io/repository/biocontainers/flextaxd/status :target: https://quay.io/repository/biocontainers/flextaxd .. _`flextaxd/tags`: https://quay.io/repository/biocontainers/flextaxd?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flextaxd/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/flextaxd/README.html