:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fqtools' .. highlight: bash fqtools ======= .. conda:recipe:: fqtools :replaces_section_title: :noindex: An efficient FASTQ manipulation suite. :homepage: https://github.com/alastair-droop/fqtools :license: GPLv3 :recipe: /`fqtools `_/`meta.yaml `_ .. conda:package:: fqtools |downloads_fqtools| |docker_fqtools| :versions: .. raw:: html
2.0-122.0-112.0-102.0-92.0-82.0-72.0-62.0-52.0-4 ``2.0-12``,  ``2.0-11``,  ``2.0-10``,  ``2.0-9``,  ``2.0-8``,  ``2.0-7``,  ``2.0-6``,  ``2.0-5``,  ``2.0-4``,  ``2.0-3``,  ``2.0-2``,  ``2.0-1``,  ``2.0-0`` .. raw:: html
:depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fqtools and update with:: mamba update fqtools To create a new environment, run:: mamba create --name myenvname fqtools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fqtools: (see `fqtools/tags`_ for valid values for ````) .. |downloads_fqtools| image:: https://img.shields.io/conda/dn/bioconda/fqtools.svg?style=flat :target: https://anaconda.org/bioconda/fqtools :alt: (downloads) .. |docker_fqtools| image:: https://quay.io/repository/biocontainers/fqtools/status :target: https://quay.io/repository/biocontainers/fqtools .. _`fqtools/tags`: https://quay.io/repository/biocontainers/fqtools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fqtools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fqtools/README.html