:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fraggenescan' .. highlight: bash fraggenescan ============ .. conda:recipe:: fraggenescan :replaces_section_title: :noindex: FragGeneScan is an application for finding \(fragmented\) genes in short reads. :homepage: https://sourceforge.net/projects/fraggenescan/ :license: BSD :recipe: /`fraggenescan `_/`meta.yaml `_ :links: doi: :doi:`10.1093/nar/gkq747`, biotools: :biotools:`fraggenescan` FragGeneScan is an application for finding \(fragmented\) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. .. conda:package:: fraggenescan |downloads_fraggenescan| |docker_fraggenescan| :versions: .. raw:: html
1.31-61.31-51.31-41.31-31.31-21.31-11.31-01.30-21.30-1 ``1.31-6``,  ``1.31-5``,  ``1.31-4``,  ``1.31-3``,  ``1.31-2``,  ``1.31-1``,  ``1.31-0``,  ``1.30-2``,  ``1.30-1``,  ``1.30-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends perl: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fraggenescan and update with:: mamba update fraggenescan To create a new environment, run:: mamba create --name myenvname fraggenescan with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fraggenescan: (see `fraggenescan/tags`_ for valid values for ````) .. |downloads_fraggenescan| image:: https://img.shields.io/conda/dn/bioconda/fraggenescan.svg?style=flat :target: https://anaconda.org/bioconda/fraggenescan :alt: (downloads) .. |docker_fraggenescan| image:: https://quay.io/repository/biocontainers/fraggenescan/status :target: https://quay.io/repository/biocontainers/fraggenescan .. _`fraggenescan/tags`: https://quay.io/repository/biocontainers/fraggenescan?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fraggenescan/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fraggenescan/README.html