:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'freebayes' .. highlight: bash freebayes ========= .. conda:recipe:: freebayes :replaces_section_title: :noindex: Bayesian haplotype\-based polymorphism discovery and genotyping :homepage: https://github.com/ekg/freebayes :license: MIT / MIT :recipe: /`freebayes `_/`meta.yaml `_ :links: biotools: :biotools:`freebayes` .. conda:package:: freebayes |downloads_freebayes| |docker_freebayes| :versions: .. raw:: html
1.3.6-11.3.6-01.3.5-41.3.5-31.3.5-21.3.5-11.3.5-01.3.4-01.3.2-2 ``1.3.6-1``,  ``1.3.6-0``,  ``1.3.5-4``,  ``1.3.5-3``,  ``1.3.5-2``,  ``1.3.5-1``,  ``1.3.5-0``,  ``1.3.4-0``,  ``1.3.2-2``,  ``1.3.2-1``,  ``1.3.2-0``,  ``1.3.1-0``,  ``1.2.0-4``,  ``1.2.0-3``,  ``1.2.0-2``,  ``1.2.0-0``,  ``1.1.0.46-5``,  ``1.1.0.46-4``,  ``1.1.0.46-3``,  ``1.1.0.46-2``,  ``1.1.0.46-1``,  ``1.1.0.46-0``,  ``1.1.0-3``,  ``1.1.0-2``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.2.29-2``,  ``1.0.2.29-1``,  ``1.0.2.29-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``0.9.21.26-0``,  ``0.9.21.7-0`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``>=1.14,<1.15.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends parallel: :depends samtools: :depends tabixpp: :depends vcflib: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install freebayes and update with:: conda update freebayes or use the docker container:: docker pull quay.io/biocontainers/freebayes: (see `freebayes/tags`_ for valid values for ````) .. |downloads_freebayes| image:: https://img.shields.io/conda/dn/bioconda/freebayes.svg?style=flat :target: https://anaconda.org/bioconda/freebayes :alt: (downloads) .. |docker_freebayes| image:: https://quay.io/repository/biocontainers/freebayes/status :target: https://quay.io/repository/biocontainers/freebayes .. _`freebayes/tags`: https://quay.io/repository/biocontainers/freebayes?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/freebayes/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/freebayes/README.html