:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'fuma'
.. highlight: bash

fuma
====

.. conda:recipe:: fuma
   :replaces_section_title:
   :noindex:

   FuMa\: reporting overlap in RNA\-seq detected fusion genes

   :homepage: https://github.com/yhoogstrate/fuma/
   :license: GNU General Public License v3 or later (GPLv3+)
   :recipe: /`fuma <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/fuma>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/fuma/meta.yaml>`_

   


.. conda:package:: fuma

   |downloads_fuma| |docker_fuma|

   :versions:
      
      

      ``4.0.0-0``,  ``3.0.6-0``,  ``3.0.5-2``,  ``3.0.5-1``,  ``3.0.5-0``,  ``3.0.3-0``

      

   
   :depends htseq: ``>=0.6.1``
   :depends numpy: 
   :depends python: ``>=3.6``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install fuma

   and update with::

      mamba update fuma

  To create a new environment, run::

      mamba create --name myenvname fuma

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/fuma:<tag>

   (see `fuma/tags`_ for valid values for ``<tag>``)


.. |downloads_fuma| image:: https://img.shields.io/conda/dn/bioconda/fuma.svg?style=flat
   :target: https://anaconda.org/bioconda/fuma
   :alt:   (downloads)
.. |docker_fuma| image:: https://quay.io/repository/biocontainers/fuma/status
   :target: https://quay.io/repository/biocontainers/fuma
.. _`fuma/tags`: https://quay.io/repository/biocontainers/fuma?tab=tags


.. raw:: html

    <script>
        var package = "fuma";
        var versions = ["4.0.0","3.0.6","3.0.5","3.0.5","3.0.5"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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