:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'galaxy-data' .. highlight: bash galaxy-data =========== .. conda:recipe:: galaxy-data :replaces_section_title: :noindex: The Galaxy models\, datatype framework\, and datatype implementations. :homepage: https://galaxyproject.org :documentation: https://docs.galaxyproject.org :developer docs: https://github.com/galaxyproject/galaxy :license: AFL-3.0 :recipe: /`galaxy-data `_/`meta.yaml `_ :links: biotools: :biotools:`galaxy`, doi: :doi:`10.1093/nar/gky379` .. conda:package:: galaxy-data |downloads_galaxy-data| |docker_galaxy-data| :versions: .. raw:: html
25.0.1-024.2.4-024.2.3-124.2.3-024.2.2-024.2.1-024.2.0-024.1.4-024.1.3-0 ``25.0.1-0``,  ``24.2.4-0``,  ``24.2.3-1``,  ``24.2.3-0``,  ``24.2.2-0``,  ``24.2.1-0``,  ``24.2.0-0``,  ``24.1.4-0``,  ``24.1.3-0``,  ``24.1.2-0``,  ``24.1.1-0``,  ``22.1.1-0``,  ``21.9.0-0``,  ``20.9.1-2``,  ``20.9.1-1``,  ``20.9.1-0`` .. raw:: html
:depends alembic: :depends alembic-utils: :depends bdbag: ``>=1.6.3`` :depends bx-python: :depends dnspython: :depends email-validator: :depends galaxy-files: ``>=25.0`` :depends galaxy-objectstore: ``>=25.0`` :depends galaxy-schema: ``>=25.0`` :depends galaxy-tool-util: ``>=25.0`` :depends galaxy-util: ``>=25.0`` :depends galaxy_sequence_utils: :depends h5grove: ``>=1.2.1`` :depends h5py: :depends isa-rwval: ``>=0.10.10`` :depends markupsafe: :depends mrcfile: :depends msal: :depends numpy: :depends parsley: :depends pycryptodome: :depends pydantic: ``>=2.7.4`` :depends pysam: ``>=0.21`` :depends python: ``>=3.8`` :depends python-isal: :depends python-magic: :depends rocrate: :depends social-auth-core: ``4.0.3`` :depends sqlalchemy: ``>=2.0,<2.1`` :depends tifffile: :depends typing-extensions: :depends webob: :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install galaxy-data and update with:: mamba update galaxy-data To create a new environment, run:: mamba create --name myenvname galaxy-data with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/galaxy-data: (see `galaxy-data/tags`_ for valid values for ````) .. |downloads_galaxy-data| image:: https://img.shields.io/conda/dn/bioconda/galaxy-data.svg?style=flat :target: https://anaconda.org/bioconda/galaxy-data :alt: (downloads) .. |docker_galaxy-data| image:: https://quay.io/repository/biocontainers/galaxy-data/status :target: https://quay.io/repository/biocontainers/galaxy-data .. _`galaxy-data/tags`: https://quay.io/repository/biocontainers/galaxy-data?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/galaxy-data/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/galaxy-data/README.html