:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'genewalk' .. highlight: bash genewalk ======== .. conda:recipe:: genewalk :replaces_section_title: :noindex: Determine gene function based on network embeddings. :homepage: https://github.com/churchmanlab/genewalk :documentation: https://genewalk.readthedocs.io/en/latest/ :license: BSD / BSD-2-Clause :recipe: /`genewalk `_/`meta.yaml `_ .. conda:package:: genewalk |downloads_genewalk| |docker_genewalk| :versions: ``1.6.1-0``,  ``1.5.3-0``,  ``1.5.2-0``,  ``1.5.1-0`` :depends gensim: ``>=4.0`` :depends goatools: :depends matplotlib-base: :depends networkx: ``>=2.1`` :depends numpy: :depends pandas: :depends plotly: ``>=4.0.0`` :depends python: :depends scipy: ``>=1.3.0`` :depends seaborn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install genewalk and update with:: mamba update genewalk To create a new environment, run:: mamba create --name myenvname genewalk with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/genewalk: (see `genewalk/tags`_ for valid values for ````) .. |downloads_genewalk| image:: https://img.shields.io/conda/dn/bioconda/genewalk.svg?style=flat :target: https://anaconda.org/bioconda/genewalk :alt: (downloads) .. |docker_genewalk| image:: https://quay.io/repository/biocontainers/genewalk/status :target: https://quay.io/repository/biocontainers/genewalk .. _`genewalk/tags`: https://quay.io/repository/biocontainers/genewalk?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genewalk/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/genewalk/README.html