:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'genomepy' .. highlight: bash genomepy ======== .. conda:recipe:: genomepy :replaces_section_title: :noindex: Install and use genomes \& gene annotations the easy way\! :homepage: https://github.com/vanheeringen-lab/genomepy :documentation: https://vanheeringen-lab.github.io/genomepy :license: MIT / MIT :recipe: /`genomepy `_/`meta.yaml `_ Install and use genomes \& gene annotations the easy way\! .. conda:package:: genomepy |downloads_genomepy| |docker_genomepy| :versions: .. raw:: html
0.16.1-10.16.1-00.16.0-00.15.0-00.14.0-20.14.0-10.14.0-00.13.1-00.13.0-0 ``0.16.1-1``,  ``0.16.1-0``,  ``0.16.0-0``,  ``0.15.0-0``,  ``0.14.0-2``,  ``0.14.0-1``,  ``0.14.0-0``,  ``0.13.1-0``,  ``0.13.0-0``,  ``0.12.0-0``,  ``0.11.1-0``,  ``0.11.0-0``,  ``0.10.0-0``,  ``0.9.3-0``,  ``0.9.2-0``,  ``0.9.1-0``,  ``0.9.0-0``,  ``0.8.4-0``,  ``0.8.3-0``,  ``0.8.2-0``,  ``0.8.1-1``,  ``0.8.1-0``,  ``0.7.2-0``,  ``0.7.1-0``,  ``0.7.0-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.5-1``,  ``0.5.5-0``,  ``0.5.4-1``,  ``0.5.4-0``,  ``0.5.2-2``,  ``0.5.2-1``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.0-0``,  ``0.3.1-0`` .. raw:: html
:depends appdirs: :depends biopython: ``>=1.73`` :depends click: :depends colorama: :depends diskcache: :depends filelock: ``>=3.5`` :depends htslib: ``>=1.11`` :depends loguru: :depends mygene: :depends mysql-connector-python: :depends norns: ``>=0.1.6`` :depends numpy: :depends pandas: :depends pyfaidx: ``>=0.7.2.1`` :depends python: ``>=3.7`` :depends requests: :depends tqdm: ``>=4.51`` :depends ucsc-bedtogenepred: :depends ucsc-genepredtobed: :depends ucsc-genepredtogtf: :depends ucsc-gff3togenepred: :depends ucsc-gtftogenepred: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install genomepy and update with:: mamba update genomepy To create a new environment, run:: mamba create --name myenvname genomepy with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/genomepy: (see `genomepy/tags`_ for valid values for ````) .. |downloads_genomepy| image:: https://img.shields.io/conda/dn/bioconda/genomepy.svg?style=flat :target: https://anaconda.org/bioconda/genomepy :alt: (downloads) .. |docker_genomepy| image:: https://quay.io/repository/biocontainers/genomepy/status :target: https://quay.io/repository/biocontainers/genomepy .. _`genomepy/tags`: https://quay.io/repository/biocontainers/genomepy?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genomepy/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/genomepy/README.html