:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'genomic_regions' .. highlight: bash genomic_regions =============== .. conda:recipe:: genomic_regions :replaces_section_title: :noindex: Consistently handle genomic regions :homepage: https://github.com/vaquerizaslab/genomic_regions :documentation: https://vaquerizaslab.github.io/genomic_regions :license: MIT :recipe: /`genomic_regions `_/`meta.yaml `_ .. conda:package:: genomic_regions |downloads_genomic_regions| |docker_genomic_regions| :versions: ``0.0.10-0``,  ``0.0.9-0`` :depends future: :depends intervaltree: :depends numpy: :depends pandas: :depends pybedtools: ``>=0.8.0`` :depends pybigwig: :depends pysam: :depends python: ``>=3.6`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install genomic_regions and update with:: mamba update genomic_regions To create a new environment, run:: mamba create --name myenvname genomic_regions with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/genomic_regions: (see `genomic_regions/tags`_ for valid values for ````) .. |downloads_genomic_regions| image:: https://img.shields.io/conda/dn/bioconda/genomic_regions.svg?style=flat :target: https://anaconda.org/bioconda/genomic_regions :alt: (downloads) .. |docker_genomic_regions| image:: https://quay.io/repository/biocontainers/genomic_regions/status :target: https://quay.io/repository/biocontainers/genomic_regions .. _`genomic_regions/tags`: https://quay.io/repository/biocontainers/genomic_regions?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genomic_regions/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/genomic_regions/README.html