:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gffcompare' .. highlight: bash gffcompare ========== .. conda:recipe:: gffcompare :replaces_section_title: :noindex: GffCompare by Geo Pertea :homepage: https://ccb.jhu.edu/software/stringtie/gffcompare.shtml :license: Artistic License 2.0 :recipe: /`gffcompare `_/`meta.yaml `_ :links: biotools: :biotools:`gffcompare` .. conda:package:: gffcompare |downloads_gffcompare| |docker_gffcompare| :versions: ``0.12.6-2``,  ``0.12.6-1``,  ``0.12.6-0``,  ``0.11.2-3``,  ``0.11.2-2``,  ``0.11.2-1``,  ``0.11.2-0``,  ``0.10.6-0``,  ``0.9.8-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gffcompare and update with:: mamba update gffcompare To create a new environment, run:: mamba create --name myenvname gffcompare with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gffcompare: (see `gffcompare/tags`_ for valid values for ````) .. |downloads_gffcompare| image:: https://img.shields.io/conda/dn/bioconda/gffcompare.svg?style=flat :target: https://anaconda.org/bioconda/gffcompare :alt: (downloads) .. |docker_gffcompare| image:: https://quay.io/repository/biocontainers/gffcompare/status :target: https://quay.io/repository/biocontainers/gffcompare .. _`gffcompare/tags`: https://quay.io/repository/biocontainers/gffcompare?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gffcompare/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gffcompare/README.html