:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'glimpse-bio' .. highlight: bash glimpse-bio =========== .. conda:recipe:: glimpse-bio :replaces_section_title: :noindex: GLIMPSE is a phasing and imputation method for large\-scale low\-coverage sequencing studies. :homepage: https://odelaneau.github.io/GLIMPSE/ :license: MIT :recipe: /`glimpse-bio `_/`meta.yaml `_ .. conda:package:: glimpse-bio |downloads_glimpse-bio| |docker_glimpse-bio| :versions: ``2.0.1-1``,  ``2.0.1-0``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.1.1-3``,  ``1.1.1-2``,  ``1.1.1-1``,  ``1.1.1-0``,  ``v1.1.1-0`` :depends boost-cpp: ``>=1.82.0,<1.82.1.0a0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends openssl: ``>=3.1.1,<4.0a0`` :depends pthread-stubs: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install glimpse-bio and update with:: mamba update glimpse-bio To create a new environment, run:: mamba create --name myenvname glimpse-bio with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/glimpse-bio: (see `glimpse-bio/tags`_ for valid values for ````) .. |downloads_glimpse-bio| image:: https://img.shields.io/conda/dn/bioconda/glimpse-bio.svg?style=flat :target: https://anaconda.org/bioconda/glimpse-bio :alt: (downloads) .. |docker_glimpse-bio| image:: https://quay.io/repository/biocontainers/glimpse-bio/status :target: https://quay.io/repository/biocontainers/glimpse-bio .. _`glimpse-bio/tags`: https://quay.io/repository/biocontainers/glimpse-bio?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/glimpse-bio/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/glimpse-bio/README.html