:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'grabix' .. highlight: bash grabix ====== .. conda:recipe:: grabix :replaces_section_title: :noindex: a wee tool for random access into BGZF files. :homepage: https://github.com/arq5x/grabix :license: MIT :recipe: /`grabix `_/`meta.yaml `_ .. conda:package:: grabix |downloads_grabix| |docker_grabix| :versions: .. raw:: html
0.1.8-90.1.8-80.1.8-70.1.8-60.1.8-50.1.8-40.1.8-30.1.8-20.1.8-1 ``0.1.8-9``,  ``0.1.8-8``,  ``0.1.8-7``,  ``0.1.8-6``,  ``0.1.8-5``,  ``0.1.8-4``,  ``0.1.8-3``,  ``0.1.8-2``,  ``0.1.8-1``,  ``0.1.8-0``,  ``0.1.7-0``,  ``0.1.6-0``,  ``0.1.3-1``,  ``0.1.3-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install grabix and update with:: mamba update grabix To create a new environment, run:: mamba create --name myenvname grabix with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/grabix: (see `grabix/tags`_ for valid values for ````) .. |downloads_grabix| image:: https://img.shields.io/conda/dn/bioconda/grabix.svg?style=flat :target: https://anaconda.org/bioconda/grabix :alt: (downloads) .. |docker_grabix| image:: https://quay.io/repository/biocontainers/grabix/status :target: https://quay.io/repository/biocontainers/grabix .. _`grabix/tags`: https://quay.io/repository/biocontainers/grabix?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/grabix/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/grabix/README.html