:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'graph2pro-var' .. highlight: bash graph2pro-var ============= .. conda:recipe:: graph2pro-var :replaces_section_title: :noindex: meta\-proteogenomic identification from mass spec and metagenomic\/transcriptomic data :homepage: https://github.com/COL-IU/graph2pro-var :license: GPL / GPL-3.0 :recipe: /`graph2pro-var `_/`meta.yaml `_ .. conda:package:: graph2pro-var |downloads_graph2pro-var| |docker_graph2pro-var| :versions: ``1.0.0-1``,  ``1.0.0-0`` :depends bowtie2: :depends cd-hit: :depends dbgraph: :depends fraggenescan: :depends gawk: :depends msgf_plus: :depends python: :depends rapsearch: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install graph2pro-var and update with:: mamba update graph2pro-var To create a new environment, run:: mamba create --name myenvname graph2pro-var with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/graph2pro-var: (see `graph2pro-var/tags`_ for valid values for ````) .. |downloads_graph2pro-var| image:: https://img.shields.io/conda/dn/bioconda/graph2pro-var.svg?style=flat :target: https://anaconda.org/bioconda/graph2pro-var :alt: (downloads) .. |docker_graph2pro-var| image:: https://quay.io/repository/biocontainers/graph2pro-var/status :target: https://quay.io/repository/biocontainers/graph2pro-var .. _`graph2pro-var/tags`: https://quay.io/repository/biocontainers/graph2pro-var?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/graph2pro-var/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/graph2pro-var/README.html