:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'graphmap' .. highlight: bash graphmap ======== .. conda:recipe:: graphmap :replaces_section_title: :noindex: A highly sensitive and accurate mapper for long\, error\-prone reads. :homepage: https://github.com/lbcb-sci/graphmap2 :license: MIT :recipe: /`graphmap `_/`meta.yaml `_ .. conda:package:: graphmap |downloads_graphmap| |docker_graphmap| :versions: .. raw:: html
0.6.3-40.6.3-30.6.3-20.6.3-10.6.3-00.5.2-20.5.2-10.5.2-00.4.0-0 ``0.6.3-4``,  ``0.6.3-3``,  ``0.6.3-2``,  ``0.6.3-1``,  ``0.6.3-0``,  ``0.5.2-2``,  ``0.5.2-1``,  ``0.5.2-0``,  ``0.4.0-0``,  ``0.3.1p1-1``,  ``0.3.1p1-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install graphmap and update with:: mamba update graphmap To create a new environment, run:: mamba create --name myenvname graphmap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/graphmap: (see `graphmap/tags`_ for valid values for ````) .. |downloads_graphmap| image:: https://img.shields.io/conda/dn/bioconda/graphmap.svg?style=flat :target: https://anaconda.org/bioconda/graphmap :alt: (downloads) .. |docker_graphmap| image:: https://quay.io/repository/biocontainers/graphmap/status :target: https://quay.io/repository/biocontainers/graphmap .. _`graphmap/tags`: https://quay.io/repository/biocontainers/graphmap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/graphmap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/graphmap/README.html