:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'grid' .. highlight: bash grid ==== .. conda:recipe:: grid :replaces_section_title: :noindex: Growth Rate Index \(GRiD\) measures bacterial growth rate from reference genomes \(including draft quality genomes\) and metagenomic bins at ultra\-low sequencing coverage \(\> 0.2x\). :homepage: https://github.com/ohlab/GRiD :license: MIT :recipe: /`grid `_/`meta.yaml `_ .. conda:package:: grid |downloads_grid| |docker_grid| :versions: .. raw:: html
1.3-31.3-21.3-11.3-01.2-01.1-41.1-31.1-21.1-1 ``1.3-3``,  ``1.3-2``,  ``1.3-1``,  ``1.3-0``,  ``1.2-0``,  ``1.1-4``,  ``1.1-3``,  ``1.1-2``,  ``1.1-1``,  ``1.1-0``,  ``1.0.6-0`` .. raw:: html
:depends bamtools: :depends bedtools: :depends blast: :depends bowtie2: :depends mosdepth: :depends parallel: :depends pathoscope: :depends r-dplyr: :depends r-getopt: :depends r-ggplot2: :depends r-gplots: :depends r-gsubfn: :depends readline: ``>=6.2`` :depends samtools: :depends seqtk: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install grid and update with:: mamba update grid To create a new environment, run:: mamba create --name myenvname grid with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/grid: (see `grid/tags`_ for valid values for ````) .. |downloads_grid| image:: https://img.shields.io/conda/dn/bioconda/grid.svg?style=flat :target: https://anaconda.org/bioconda/grid :alt: (downloads) .. |docker_grid| image:: https://quay.io/repository/biocontainers/grid/status :target: https://quay.io/repository/biocontainers/grid .. _`grid/tags`: https://quay.io/repository/biocontainers/grid?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/grid/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/grid/README.html