:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'halla' .. highlight: bash halla ===== .. conda:recipe:: halla :replaces_section_title: :noindex: HAllA\: Hierarchically All\-against\-All Association Testing. :homepage: http://huttenhower.sph.harvard.edu/halla :license: MIT / MIT :recipe: /`halla `_/`meta.yaml `_ .. conda:package:: halla |downloads_halla| |docker_halla| :versions: ``0.8.17-0`` :depends jenkspy: ``>=0.1.4`` :depends matplotlib: ``>=1.5.1`` :depends minepy: ``>=1.0.0`` :depends numpy: ``>=1.9.2`` :depends pandas: ``>=0.18.1`` :depends python: ``>=2.7,<2.8.0a0`` :depends scikit-learn: ``>=0.14.1`` :depends scipy: ``>=0.17.0`` :depends setuptools: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install halla and update with:: mamba update halla To create a new environment, run:: mamba create --name myenvname halla with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/halla: (see `halla/tags`_ for valid values for ````) .. |downloads_halla| image:: https://img.shields.io/conda/dn/bioconda/halla.svg?style=flat :target: https://anaconda.org/bioconda/halla :alt: (downloads) .. |docker_halla| image:: https://quay.io/repository/biocontainers/halla/status :target: https://quay.io/repository/biocontainers/halla .. _`halla/tags`: https://quay.io/repository/biocontainers/halla?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/halla/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/halla/README.html