:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'hifive' .. highlight: bash hifive ====== .. conda:recipe:: hifive :replaces_section_title: :noindex: Python library for normalizing and analyzing HiC and 5C data :homepage: https://github.com/bxlab/hifive :license: MIT / MIT :recipe: /`hifive `_/`meta.yaml `_ .. conda:package:: hifive |downloads_hifive| |docker_hifive| :versions: .. raw:: html
1.5.7-41.5.7-31.5.7-21.5.7-11.5.7-01.5.6-21.5.6-01.5.3-01.5.1-0 ``1.5.7-4``,  ``1.5.7-3``,  ``1.5.7-2``,  ``1.5.7-1``,  ``1.5.7-0``,  ``1.5.6-2``,  ``1.5.6-0``,  ``1.5.3-0``,  ``1.5.1-0``,  ``1.4.0-0``,  ``1.3.1-0``,  ``1.3.0-0``,  ``1.2.1-0`` .. raw:: html
:depends h5py: :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends mpi4py: :depends numpy: :depends pillow: :depends pysam: :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :depends pyx: ``0.12.1`` :depends scipy: :depends setuptools_cython: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install hifive and update with:: mamba update hifive To create a new environment, run:: mamba create --name myenvname hifive with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/hifive: (see `hifive/tags`_ for valid values for ````) .. |downloads_hifive| image:: https://img.shields.io/conda/dn/bioconda/hifive.svg?style=flat :target: https://anaconda.org/bioconda/hifive :alt: (downloads) .. |docker_hifive| image:: https://quay.io/repository/biocontainers/hifive/status :target: https://quay.io/repository/biocontainers/hifive .. _`hifive/tags`: https://quay.io/repository/biocontainers/hifive?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hifive/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/hifive/README.html