:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'hla-la' .. highlight: bash hla-la ====== .. conda:recipe:: hla-la :replaces_section_title: :noindex: HLA typing from short and long reads :homepage: https://github.com/DiltheyLab/HLA-LA :license: GPL :recipe: /`hla-la `_/`meta.yaml `_ :links: biotools: :biotools:`hla-la` .. conda:package:: hla-la |downloads_hla-la| |docker_hla-la| :versions: .. raw:: html
1.0.3-21.0.3-11.0.3-01.0.1-61.0.1-51.0.1-41.0.1-31.0-21.0-1 ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0``,  ``1.0.1-6``,  ``1.0.1-5``,  ``1.0.1-4``,  ``1.0.1-3``,  ``1.0-2``,  ``1.0-1``,  ``1.0-0`` .. raw:: html
:depends bamtools: ``>=2.5.1,<2.5.2.0a0`` :depends boost-cpp: ``>=1.74.0,<1.74.1.0a0`` :depends bwa: ``0.7.12`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends mummer: :depends perl-bio-db-hts: :depends perl-bio-featureio: :depends perl-bioperl: :depends perl-bioperl-core: ``1.7.8.*`` :depends perl-list-moreutils: :depends perl-text-levenshtein: :depends picard: :depends r-base: ``4.*`` :depends samtools: ``>=1.10`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install hla-la and update with:: mamba update hla-la To create a new environment, run:: mamba create --name myenvname hla-la with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/hla-la: (see `hla-la/tags`_ for valid values for ````) .. |downloads_hla-la| image:: https://img.shields.io/conda/dn/bioconda/hla-la.svg?style=flat :target: https://anaconda.org/bioconda/hla-la :alt: (downloads) .. |docker_hla-la| image:: https://quay.io/repository/biocontainers/hla-la/status :target: https://quay.io/repository/biocontainers/hla-la .. _`hla-la/tags`: https://quay.io/repository/biocontainers/hla-la?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hla-la/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/hla-la/README.html