:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'hmftools-linx' .. highlight: bash hmftools-linx ============= .. conda:recipe:: hmftools-linx :replaces_section_title: :noindex: LINX is an annotation\, interpretation and visualisation tool for structural variants. :homepage: https://github.com/hartwigmedical/hmftools/tree/master/linx :license: GPL / GPL-3.0-only :recipe: /`hmftools-linx `_/`meta.yaml `_ .. conda:package:: hmftools-linx |downloads_hmftools-linx| |docker_hmftools-linx| :versions: .. raw:: html
1.25-01.23.6-01.22.1-01.22-01.21-01.20-01.19-01.18-01.17-0 ``1.25-0``,  ``1.23.6-0``,  ``1.22.1-0``,  ``1.22-0``,  ``1.21-0``,  ``1.20-0``,  ``1.19-0``,  ``1.18-0``,  ``1.17-0``,  ``1.16-0``,  ``1.15-0``,  ``1.14-1``,  ``1.14-0``,  ``1.13-0``,  ``1.12-0``,  ``1.11-0``,  ``1.10-1``,  ``1.10-0``,  ``1.7-0``,  ``1.6-0``,  ``1.5-0``,  ``1.4-0`` .. raw:: html
:depends bioconductor-gviz: :depends circos: ``>=0.69.6`` :depends openjdk: ``>=8`` :depends r-cowplot: :depends r-dplyr: :depends r-ggplot2: :depends r-magick: :depends r-tidyr: :depends xorg-libxtst: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install hmftools-linx and update with:: mamba update hmftools-linx To create a new environment, run:: mamba create --name myenvname hmftools-linx with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/hmftools-linx: (see `hmftools-linx/tags`_ for valid values for ````) .. |downloads_hmftools-linx| image:: https://img.shields.io/conda/dn/bioconda/hmftools-linx.svg?style=flat :target: https://anaconda.org/bioconda/hmftools-linx :alt: (downloads) .. |docker_hmftools-linx| image:: https://quay.io/repository/biocontainers/hmftools-linx/status :target: https://quay.io/repository/biocontainers/hmftools-linx .. _`hmftools-linx/tags`: https://quay.io/repository/biocontainers/hmftools-linx?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmftools-linx/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/hmftools-linx/README.html