:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'hmmratac' .. highlight: bash hmmratac ======== .. conda:recipe:: hmmratac :replaces_section_title: :noindex: Peak caller for ATAC\-seq data :homepage: https://github.com/LiuLabUB/HMMRATAC :license: GPLv3 :recipe: /`hmmratac `_/`meta.yaml `_ :links: doi: :doi:`10.1093/nar/gkz533` .. conda:package:: hmmratac |downloads_hmmratac| |docker_hmmratac| :versions: ``1.2.10-1``,  ``1.2.10-0``,  ``1.2.9-0``,  ``1.2.8-0``,  ``1.2.7-0``,  ``1.2.6-0``,  ``1.2.5-0`` :depends openjdk: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install hmmratac and update with:: mamba update hmmratac To create a new environment, run:: mamba create --name myenvname hmmratac with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/hmmratac: (see `hmmratac/tags`_ for valid values for ````) .. |downloads_hmmratac| image:: https://img.shields.io/conda/dn/bioconda/hmmratac.svg?style=flat :target: https://anaconda.org/bioconda/hmmratac :alt: (downloads) .. |docker_hmmratac| image:: https://quay.io/repository/biocontainers/hmmratac/status :target: https://quay.io/repository/biocontainers/hmmratac .. _`hmmratac/tags`: https://quay.io/repository/biocontainers/hmmratac?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmmratac/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/hmmratac/README.html