:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'htseq' .. highlight: bash htseq ===== .. conda:recipe:: htseq :replaces_section_title: :noindex: HTSeq is a Python library to facilitate processing and analysis of data from high\-throughput sequencing \(HTS\) experiments. :homepage: https://github.com/htseq/htseq :license: GPL-3.0-only :recipe: /`htseq `_/`meta.yaml `_ :links: biotools: :biotools:`htseq`, usegalaxy-eu: :usegalaxy-eu:`htseq_count`, doi: :doi:`10.1093/bioinformatics/btu638` .. conda:package:: htseq |downloads_htseq| |docker_htseq| :versions: .. raw:: html
2.0.2-02.0.1-01.99.2-21.99.2-11.99.2-00.13.5-10.13.5-00.12.4-20.12.4-1 ``2.0.2-0``,  ``2.0.1-0``,  ``1.99.2-2``,  ``1.99.2-1``,  ``1.99.2-0``,  ``0.13.5-1``,  ``0.13.5-0``,  ``0.12.4-2``,  ``0.12.4-1``,  ``0.12.4-0``,  ``0.12.3-0``,  ``0.11.3-0``,  ``0.11.2-1``,  ``0.11.2-0``,  ``0.11.1-0``,  ``0.11.0-1``,  ``0.11.0-0``,  ``0.9.1-4``,  ``0.9.1-3``,  ``0.9.1-2``,  ``0.9.1-1``,  ``0.9.1-0``,  ``0.7.2-4``,  ``0.7.2-3``,  ``0.7.2-2``,  ``0.7.2-1``,  ``0.7.2-0``,  ``0.6.1.post1-6``,  ``0.6.1.post1-5``,  ``0.6.1.post1-4``,  ``0.6.1-5``,  ``0.6.1-4``,  ``0.6.1-3``,  ``0.6.1-2``,  ``0.6.1-1``,  ``0.6.1-0``,  ``0.6.1p1-1``,  ``0.6.1p1-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends matplotlib-base: ``>=1.4`` :depends numpy: ``>=1.17.5,<2.0a0`` :depends pysam: ``>=0.15.1`` :depends python: ``>=3.7,<3.8.0a0`` :depends python_abi: ``3.7.* *_cp37m`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install htseq and update with:: conda update htseq or use the docker container:: docker pull quay.io/biocontainers/htseq: (see `htseq/tags`_ for valid values for ````) .. |downloads_htseq| image:: https://img.shields.io/conda/dn/bioconda/htseq.svg?style=flat :target: https://anaconda.org/bioconda/htseq :alt: (downloads) .. |docker_htseq| image:: https://quay.io/repository/biocontainers/htseq/status :target: https://quay.io/repository/biocontainers/htseq .. _`htseq/tags`: https://quay.io/repository/biocontainers/htseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/htseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/htseq/README.html