:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'htslib' .. highlight: bash htslib ====== .. conda:recipe:: htslib :replaces_section_title: :noindex: C library for high\-throughput sequencing data formats. :homepage: https://github.com/samtools/htslib :license: MIT :recipe: /`htslib `_/`meta.yaml `_ :links: biotools: :biotools:`HTSlib` .. conda:package:: htslib |downloads_htslib| |docker_htslib| :versions: .. raw:: html
1.15.1-01.15-01.14-21.14-11.14-01.13-01.12-11.12-01.11-2 ``1.15.1-0``,  ``1.15-0``,  ``1.14-2``,  ``1.14-1``,  ``1.14-0``,  ``1.13-0``,  ``1.12-1``,  ``1.12-0``,  ``1.11-2``,  ``1.11-1``,  ``1.11-0``,  ``1.10.2-1``,  ``1.10.2-0``,  ``1.10.1-0``,  ``1.10-1``,  ``1.10-0``,  ``1.9-9``,  ``1.9-8``,  ``1.9-7``,  ``1.9-6``,  ``1.9-5``,  ``1.9-4``,  ``1.9-3``,  ``1.9-2``,  ``1.9-1``,  ``1.9-0``,  ``1.8-2``,  ``1.8-1``,  ``1.8-0``,  ``1.7-0``,  ``1.6-0``,  ``1.5-0``,  ``1.4.1-0``,  ``1.4-0``,  ``1.3.2-0``,  ``1.3.1-5``,  ``1.3.1-4``,  ``1.3.1-3``,  ``1.3.1-2``,  ``1.3.1-1``,  ``1.3.1-0``,  ``1.3-1``,  ``1.3-0``,  ``1.2.1-0``,  ``1.1-3``,  ``1.1-2``,  ``1.1-1``,  ``1.1-0`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends libcurl: ``>=7.82.0,<8.0a0`` :depends libdeflate: ``>=1.10,<1.11.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends libzlib: ``>=1.2.11,<1.3.0a0`` :depends openssl: ``>=1.1.1n,<1.1.2a`` :depends xz: ``>=5.2.5,<5.3.0a0`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install htslib and update with:: conda update htslib or use the docker container:: docker pull quay.io/biocontainers/htslib: (see `htslib/tags`_ for valid values for ````) .. |downloads_htslib| image:: https://img.shields.io/conda/dn/bioconda/htslib.svg?style=flat :target: https://anaconda.org/bioconda/htslib :alt: (downloads) .. |docker_htslib| image:: https://quay.io/repository/biocontainers/htslib/status :target: https://quay.io/repository/biocontainers/htslib .. _`htslib/tags`: https://quay.io/repository/biocontainers/htslib?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/htslib/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/htslib/README.html