:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ibdne' .. highlight: bash ibdne ===== .. conda:recipe:: ibdne :replaces_section_title: :noindex: The IBDNe program estimates the historical effective population size of a homogenous population \(from the output of IDBseq\). :homepage: http://faculty.washington.edu/browning/ibdne.html :license: Apache v2.0 :recipe: /`ibdne `_/`meta.yaml `_ .. conda:package:: ibdne |downloads_ibdne| |docker_ibdne| :versions: ``04Sep15.e78-3``,  ``04Sep15.e78-2``,  ``04Sep15.e78-1``,  ``04Sep15.e78-0`` :depends openjdk: ``>=6.0.77`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ibdne and update with:: mamba update ibdne To create a new environment, run:: mamba create --name myenvname ibdne with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ibdne: (see `ibdne/tags`_ for valid values for ````) .. |downloads_ibdne| image:: https://img.shields.io/conda/dn/bioconda/ibdne.svg?style=flat :target: https://anaconda.org/bioconda/ibdne :alt: (downloads) .. |docker_ibdne| image:: https://quay.io/repository/biocontainers/ibdne/status :target: https://quay.io/repository/biocontainers/ibdne .. _`ibdne/tags`: https://quay.io/repository/biocontainers/ibdne?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ibdne/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ibdne/README.html