:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'igdiscover' .. highlight: bash igdiscover ========== .. conda:recipe:: igdiscover :replaces_section_title: :noindex: Analyze antibody repertoires and discover new V genes :homepage: https://igdiscover.se/ :license: MIT :recipe: /`igdiscover `_/`meta.yaml `_ :links: biotools: :biotools:`igdiscover`, doi: :doi:`10.1038/ncomms13642` .. conda:package:: igdiscover |downloads_igdiscover| |docker_igdiscover| :versions: .. raw:: html
0.15.1-20.15.1-10.15.1-00.14-00.13-00.12.3-10.12.3-00.12.2-00.12.1-0 ``0.15.1-2``,  ``0.15.1-1``,  ``0.15.1-0``,  ``0.14-0``,  ``0.13-0``,  ``0.12.3-1``,  ``0.12.3-0``,  ``0.12.2-0``,  ``0.12.1-0``,  ``0.12-0``,  ``0.11-0``,  ``0.10-3``,  ``0.10-2``,  ``0.10-1``,  ``0.9-1``,  ``0.9-0``,  ``0.8.0-1``,  ``0.8.0-0``,  ``0.7.0-0``,  ``0.6.0-1``,  ``0.5-1``,  ``0.4-1``,  ``0.3-1`` .. raw:: html
:depends cutadapt: ``>=3.5`` :depends dnaio: ``>=0.7.1`` :depends flash: ``1.2.*`` :depends igblast: ``1.17.*`` :depends matplotlib-base: ``>=3.1.0`` :depends muscle: ``3.8.*`` :depends numpy: ``>=1.17.5`` :depends pandas: ``>=1.0`` :depends pear: ``0.9.6.*`` :depends python: ``>=3.6`` :depends ruamel.yaml: ``0.16.*`` :depends scipy: ``>=1.4.1`` :depends seaborn-base: ``>=0.11.*`` :depends snakemake-minimal: ``>=5.9`` :depends tinyalign: ``>=0.2`` :depends xopen: ``>=1.2.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install igdiscover and update with:: mamba update igdiscover To create a new environment, run:: mamba create --name myenvname igdiscover with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/igdiscover: (see `igdiscover/tags`_ for valid values for ````) .. |downloads_igdiscover| image:: https://img.shields.io/conda/dn/bioconda/igdiscover.svg?style=flat :target: https://anaconda.org/bioconda/igdiscover :alt: (downloads) .. |docker_igdiscover| image:: https://quay.io/repository/biocontainers/igdiscover/status :target: https://quay.io/repository/biocontainers/igdiscover .. _`igdiscover/tags`: https://quay.io/repository/biocontainers/igdiscover?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/igdiscover/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/igdiscover/README.html