:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'infernal' .. highlight: bash infernal ======== .. conda:recipe:: infernal :replaces_section_title: :noindex: Infernal is for searching DNA sequence databases for RNA structure and sequence similarities. :homepage: http://eddylab.org/infernal :documentation: http://eddylab.org/infernal/Userguide.pdf :developer docs: https://github.com/EddyRivasLab/infernal :license: BSD / BSD-3-Clause :recipe: /`infernal `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btt509`, biotools: :biotools:`infernal` Infernal \(\"INFERence of RNA ALignment\"\) is for searching DNA sequence databases for RNA structure and sequence similarities. .. conda:package:: infernal |downloads_infernal| |docker_infernal| :versions: .. raw:: html
1.1.5-01.1.4-41.1.4-31.1.4-21.1.4-11.1.4-01.1.3-11.1.3-01.1.2-3 ``1.1.5-0``,  ``1.1.4-4``,  ``1.1.4-3``,  ``1.1.4-2``,  ``1.1.4-1``,  ``1.1.4-0``,  ``1.1.3-1``,  ``1.1.3-0``,  ``1.1.2-3``,  ``1.1.2-2``,  ``1.1.2-1``,  ``1.1.2-0``,  ``1.1.1-0``,  ``1.0.2-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install infernal and update with:: mamba update infernal To create a new environment, run:: mamba create --name myenvname infernal with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/infernal: (see `infernal/tags`_ for valid values for ````) .. |downloads_infernal| image:: https://img.shields.io/conda/dn/bioconda/infernal.svg?style=flat :target: https://anaconda.org/bioconda/infernal :alt: (downloads) .. |docker_infernal| image:: https://quay.io/repository/biocontainers/infernal/status :target: https://quay.io/repository/biocontainers/infernal .. _`infernal/tags`: https://quay.io/repository/biocontainers/infernal?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/infernal/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/infernal/README.html