:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'intervaltree_bio' .. highlight: bash intervaltree_bio ================ .. conda:recipe:: intervaltree_bio :replaces_section_title: :noindex: Interval tree convenience classes for genomic data :homepage: https://github.com/konstantint/intervaltree-bio :license: MIT License :recipe: /`intervaltree_bio `_/`meta.yaml `_ .. conda:package:: intervaltree_bio |downloads_intervaltree_bio| |docker_intervaltree_bio| :versions: ``1.0.1-2``,  ``1.0.1-1``,  ``1.0.1-0`` :depends intervaltree: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install intervaltree_bio and update with:: mamba update intervaltree_bio To create a new environment, run:: mamba create --name myenvname intervaltree_bio with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/intervaltree_bio: (see `intervaltree_bio/tags`_ for valid values for ````) .. |downloads_intervaltree_bio| image:: https://img.shields.io/conda/dn/bioconda/intervaltree_bio.svg?style=flat :target: https://anaconda.org/bioconda/intervaltree_bio :alt: (downloads) .. |docker_intervaltree_bio| image:: https://quay.io/repository/biocontainers/intervaltree_bio/status :target: https://quay.io/repository/biocontainers/intervaltree_bio .. _`intervaltree_bio/tags`: https://quay.io/repository/biocontainers/intervaltree_bio?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/intervaltree_bio/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/intervaltree_bio/README.html