:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'itsx'
.. highlight: bash

itsx
====

.. conda:recipe:: itsx
   :replaces_section_title:
   :noindex:

   ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences\, which is commonly used as a molecular barcode for e.g. fungi.

   :homepage: http://microbiology.se/software/itsx/
   :license: GNU General Public License v3.0
   :recipe: /`itsx <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/itsx>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/itsx/meta.yaml>`_

   


.. conda:package:: itsx

   |downloads_itsx| |docker_itsx|

   :versions:
      
      

      ``1.1.3-1``,  ``1.1.3-0``,  ``1.1.2-0``,  ``1.1b-2``,  ``1.1b-1``,  ``1.1b-0``

      

   
   :depends hmmer: ``>=3.1b2``
   :depends perl: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install itsx

   and update with::

      mamba update itsx

  To create a new environment, run::

      mamba create --name myenvname itsx

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/itsx:<tag>

   (see `itsx/tags`_ for valid values for ``<tag>``)


.. |downloads_itsx| image:: https://img.shields.io/conda/dn/bioconda/itsx.svg?style=flat
   :target: https://anaconda.org/bioconda/itsx
   :alt:   (downloads)
.. |docker_itsx| image:: https://quay.io/repository/biocontainers/itsx/status
   :target: https://quay.io/repository/biocontainers/itsx
.. _`itsx/tags`: https://quay.io/repository/biocontainers/itsx?tab=tags


.. raw:: html

    <script>
        var package = "itsx";
        var versions = ["1.1.3","1.1.3","1.1.2","1.1b","1.1b"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/itsx/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/itsx/README.html