:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'jannovar-cli' .. highlight: bash jannovar-cli ============ .. conda:recipe:: jannovar-cli :replaces_section_title: :noindex: Java tool for performing annotation of VCF files :homepage: https://github.com/charite/jannovar :license: BSD2 :recipe: /`jannovar-cli `_/`meta.yaml `_ .. conda:package:: jannovar-cli |downloads_jannovar-cli| |docker_jannovar-cli| :versions: .. raw:: html
0.36-00.35-10.35-00.34-00.33-00.31-00.29-00.28-00.27-1 ``0.36-0``,  ``0.35-1``,  ``0.35-0``,  ``0.34-0``,  ``0.33-0``,  ``0.31-0``,  ``0.29-0``,  ``0.28-0``,  ``0.27-1``,  ``0.26-1``,  ``0.25-1``,  ``0.25-0``,  ``0.24-2``,  ``0.24-1``,  ``0.23-1``,  ``0.23-0``,  ``0.22-0``,  ``0.21-0``,  ``0.20-0`` .. raw:: html
:depends openjdk: ``>=8`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install jannovar-cli and update with:: mamba update jannovar-cli To create a new environment, run:: mamba create --name myenvname jannovar-cli with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/jannovar-cli: (see `jannovar-cli/tags`_ for valid values for ````) .. |downloads_jannovar-cli| image:: https://img.shields.io/conda/dn/bioconda/jannovar-cli.svg?style=flat :target: https://anaconda.org/bioconda/jannovar-cli :alt: (downloads) .. |docker_jannovar-cli| image:: https://quay.io/repository/biocontainers/jannovar-cli/status :target: https://quay.io/repository/biocontainers/jannovar-cli .. _`jannovar-cli/tags`: https://quay.io/repository/biocontainers/jannovar-cli?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jannovar-cli/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/jannovar-cli/README.html