:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'jass_preprocessing' .. highlight: bash jass_preprocessing ================== .. conda:recipe:: jass_preprocessing :replaces_section_title: :noindex: Harmonizing raw GWAS summary statistic for further analysis with jass :homepage: http://statistical-genetics.pages.pasteur.fr/jass_preprocessing/ :license: MIT / MIT :recipe: /`jass_preprocessing `_/`meta.yaml `_ .. conda:package:: jass_preprocessing |downloads_jass_preprocessing| |docker_jass_preprocessing| :versions: ``2.2-0``,  ``2.1-0``,  ``2.0.1-0``,  ``2.0-0``,  ``1.0-0`` :depends numpy: :depends pandas: :depends python: ``>=3.6`` :depends scipy: :depends seaborn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install jass_preprocessing and update with:: mamba update jass_preprocessing To create a new environment, run:: mamba create --name myenvname jass_preprocessing with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/jass_preprocessing: (see `jass_preprocessing/tags`_ for valid values for ````) .. |downloads_jass_preprocessing| image:: https://img.shields.io/conda/dn/bioconda/jass_preprocessing.svg?style=flat :target: https://anaconda.org/bioconda/jass_preprocessing :alt: (downloads) .. |docker_jass_preprocessing| image:: https://quay.io/repository/biocontainers/jass_preprocessing/status :target: https://quay.io/repository/biocontainers/jass_preprocessing .. _`jass_preprocessing/tags`: https://quay.io/repository/biocontainers/jass_preprocessing?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jass_preprocessing/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/jass_preprocessing/README.html