:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'jbrowse' .. highlight: bash jbrowse ======= .. conda:recipe:: jbrowse :replaces_section_title: :noindex: The JBrowse Genome Browser :homepage: https://jbrowse.org/ :license: LGPL :recipe: /`jbrowse `_/`meta.yaml `_ :links: biotools: :biotools:`jbrowse`, doi: :doi:`10.1101/gr.094607.109` .. conda:package:: jbrowse |downloads_jbrowse| |docker_jbrowse| :versions: .. raw:: html
1.16.11-61.16.11-51.16.11-41.16.11-31.16.11-21.16.11-11.16.11-01.16.10-01.16.9-0 ``1.16.11-6``,  ``1.16.11-5``,  ``1.16.11-4``,  ``1.16.11-3``,  ``1.16.11-2``,  ``1.16.11-1``,  ``1.16.11-0``,  ``1.16.10-0``,  ``1.16.9-0``,  ``1.16.8-0``,  ``1.16.6-1``,  ``1.16.6-0``,  ``1.16.5-0``,  ``1.16.4-0``,  ``1.16.2-7``,  ``1.16.2-6``,  ``1.16.2-5``,  ``1.16.2-4``,  ``1.16.1-4``,  ``1.16.1-3``,  ``1.16.1-2``,  ``1.16.1-1``,  ``1.16.1-0``,  ``1.15.4-0``,  ``1.15.1-0``,  ``1.15.0-0``,  ``1.12.5-2``,  ``1.12.5-0``,  ``1.12.3-0``,  ``1.12.1-3``,  ``1.12.1-2``,  ``1.12.1-1``,  ``1.12.1-0`` .. raw:: html
:depends gff3sort: :depends libcxx: ``>=15.0.7`` :depends nodejs: ``>=15.14.0,<16.0a0`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :depends perl-bio-featureio: :depends perl-bio-gff3: :depends perl-bioperl: :depends perl-capture-tiny: :depends perl-db-file: :depends perl-devel-size: :depends perl-digest-crc32: :depends perl-exporter-tiny: :depends perl-file-copy-recursive: :depends perl-file-next: :depends perl-hash-merge: :depends perl-heap-simple: :depends perl-io-uncompress-gunzip: :depends perl-json: :depends perl-list-moreutils: :depends perl-local-lib: :depends perl-perlio-gzip: :depends perl-scalar-list-utils: :depends perl-test-deep: :depends perl-test-simple: :depends perl-test-warn: :depends perl-uri: ``5.17.*`` :depends python_abi: ``2.7.* *_cp27m`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install jbrowse and update with:: mamba update jbrowse To create a new environment, run:: mamba create --name myenvname jbrowse with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/jbrowse: (see `jbrowse/tags`_ for valid values for ````) .. |downloads_jbrowse| image:: https://img.shields.io/conda/dn/bioconda/jbrowse.svg?style=flat :target: https://anaconda.org/bioconda/jbrowse :alt: (downloads) .. |docker_jbrowse| image:: https://quay.io/repository/biocontainers/jbrowse/status :target: https://quay.io/repository/biocontainers/jbrowse .. _`jbrowse/tags`: https://quay.io/repository/biocontainers/jbrowse?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jbrowse/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/jbrowse/README.html