:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'kegg-pathways-completeness' .. highlight: bash kegg-pathways-completeness ========================== .. conda:recipe:: kegg-pathways-completeness :replaces_section_title: :noindex: The tool counts completeness of each KEGG pathway for protein sequences. :homepage: https://github.com/EBI-Metagenomics/kegg-pathways-completeness-tool :license: Apache-2.0 :recipe: /`kegg-pathways-completeness `_/`meta.yaml `_ .. conda:package:: kegg-pathways-completeness |downloads_kegg-pathways-completeness| |docker_kegg-pathways-completeness| :versions: ``1.3.0-0``,  ``1.2.1-0``,  ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2-0`` :depends biopython: ``>=1.83`` :depends networkx: ``>=3.3`` :depends pydot: ``>=3.0.3`` :depends python: ``>=3.10`` :depends python-graphviz: ``>=0.20.3`` :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install kegg-pathways-completeness and update with:: mamba update kegg-pathways-completeness To create a new environment, run:: mamba create --name myenvname kegg-pathways-completeness with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/kegg-pathways-completeness: (see `kegg-pathways-completeness/tags`_ for valid values for ````) .. |downloads_kegg-pathways-completeness| image:: https://img.shields.io/conda/dn/bioconda/kegg-pathways-completeness.svg?style=flat :target: https://anaconda.org/bioconda/kegg-pathways-completeness :alt: (downloads) .. |docker_kegg-pathways-completeness| image:: https://quay.io/repository/biocontainers/kegg-pathways-completeness/status :target: https://quay.io/repository/biocontainers/kegg-pathways-completeness .. _`kegg-pathways-completeness/tags`: https://quay.io/repository/biocontainers/kegg-pathways-completeness?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kegg-pathways-completeness/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/kegg-pathways-completeness/README.html