:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'komb' .. highlight: bash komb ==== .. conda:recipe:: komb :replaces_section_title: :noindex: Characterizing metagenomes using K\-Core decomposition :homepage: https://gitlab.com/treangenlab/komb :license: GPL-3.0-or-later :recipe: /`komb `_/`meta.yaml `_ .. conda:package:: komb |downloads_komb| |docker_komb| :versions: ``1.0-5``,  ``1.0-4``,  ``1.0-3``,  ``1.0-2``,  ``1.0-0`` :depends abyss: ``2.0.2.*`` :depends bifrost: ``>=1.0.5`` :depends bowtie2: ``>=2.3.5.1`` :depends igraph: ``0.8.*`` :depends igraph: ``>=0.8.3,<0.9.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.12,<1.3.0a0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends zlib: ``>=1.2.12,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install komb and update with:: mamba update komb To create a new environment, run:: mamba create --name myenvname komb with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/komb: (see `komb/tags`_ for valid values for ````) .. |downloads_komb| image:: https://img.shields.io/conda/dn/bioconda/komb.svg?style=flat :target: https://anaconda.org/bioconda/komb :alt: (downloads) .. |docker_komb| image:: https://quay.io/repository/biocontainers/komb/status :target: https://quay.io/repository/biocontainers/komb .. _`komb/tags`: https://quay.io/repository/biocontainers/komb?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/komb/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/komb/README.html