:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'kpal' .. highlight: bash kpal ==== .. conda:recipe:: kpal :replaces_section_title: :noindex: Analysis toolkit and programming library for k\-mer profiles :homepage: https://kpal.readthedocs.org :license: MIT License :recipe: /`kpal `_/`meta.yaml `_ .. conda:package:: kpal |downloads_kpal| |docker_kpal| :versions: ``2.1.1-3``,  ``2.1.1-2``,  ``2.1.1-1``,  ``2.1.1-0`` :depends biopython: :depends future: :depends h5py: ``>=2.1`` :depends python: :depends semantic_version: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install kpal and update with:: mamba update kpal To create a new environment, run:: mamba create --name myenvname kpal with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/kpal: (see `kpal/tags`_ for valid values for ````) .. |downloads_kpal| image:: https://img.shields.io/conda/dn/bioconda/kpal.svg?style=flat :target: https://anaconda.org/bioconda/kpal :alt: (downloads) .. |docker_kpal| image:: https://quay.io/repository/biocontainers/kpal/status :target: https://quay.io/repository/biocontainers/kpal .. _`kpal/tags`: https://quay.io/repository/biocontainers/kpal?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kpal/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/kpal/README.html