:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'lap' .. highlight: bash lap === .. conda:recipe:: lap :replaces_section_title: :noindex: De novo genome assembly evaluation :homepage: http://assembly-eval.sourceforge.net/ :license: :recipe: /`lap `_/`meta.yaml `_ .. conda:package:: lap |downloads_lap| |docker_lap| :versions: ``1.1.r186-0`` :depends bowtie2: :depends libgcc: :depends python: ``2.7*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install lap and update with:: mamba update lap To create a new environment, run:: mamba create --name myenvname lap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/lap: (see `lap/tags`_ for valid values for ````) .. |downloads_lap| image:: https://img.shields.io/conda/dn/bioconda/lap.svg?style=flat :target: https://anaconda.org/bioconda/lap :alt: (downloads) .. |docker_lap| image:: https://quay.io/repository/biocontainers/lap/status :target: https://quay.io/repository/biocontainers/lap .. _`lap/tags`: https://quay.io/repository/biocontainers/lap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/lap/README.html