:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'last' .. highlight: bash last ==== .. conda:recipe:: last :replaces_section_title: :noindex: LAST finds \& aligns related regions of sequences. :homepage: https://gitlab.com/mcfrith/last :license: GPL3 / GPL-3.0-or-later :recipe: /`last `_/`meta.yaml `_ :links: biotools: :biotools:`last` LAST finds \& aligns related regions of sequences. It is designed for moderately large data \(e.g. genomes\, DNA reads\, proteomes\). It\'s especially good at\: finding rearrangements and recombinations\; finding DNA\-versus\-protein related regions\; unusual data like AT\-rich DNA\; sensitive DNA\-DNA search. .. conda:package:: last |downloads_last| |docker_last| :versions: .. raw:: html
1542-01541-01540-01526-01522-01521-01519-01518-01517-0 ``1542-0``,  ``1541-0``,  ``1540-0``,  ``1526-0``,  ``1522-0``,  ``1521-0``,  ``1519-0``,  ``1518-0``,  ``1517-0``,  ``1513-0``,  ``1512-0``,  ``1454-0``,  ``1453-2``,  ``1453-1``,  ``1453-0``,  ``1452-0``,  ``1450-0``,  ``1449-0``,  ``1448-0``,  ``1447-0``,  ``1445-0``,  ``1422-0``,  ``1420-0``,  ``1418-0``,  ``1411-1``,  ``1411-0``,  ``1410-0``,  ``1409-0``,  ``1407-1``,  ``1407-0``,  ``1406-1``,  ``1406-0``,  ``1389-0``,  ``1387-0``,  ``1356-0``,  ``1296-0``,  ``1293-0``,  ``1291-0``,  ``1282-0``,  ``1281-0``,  ``1270-0``,  ``1268-1``,  ``1268-0``,  ``1260-1``,  ``1260-0``,  ``1257-0``,  ``1256-0``,  ``1254-0``,  ``1250-0``,  ``1238-0``,  ``1219-0``,  ``1205-1``,  ``1205-0``,  ``1186-0``,  ``1060-0``,  ``1047-0``,  ``1021-0``,  ``992-0``,  ``982-0``,  ``963-1``,  ``963-0``,  ``941-2``,  ``941-0``,  ``876-0``,  ``874-5``,  ``874-4``,  ``874-3``,  ``874-2``,  ``874-1``,  ``874-0``,  ``847-0``,  ``719-2``,  ``719-1``,  ``638-6``,  ``638-5``,  ``638-4``,  ``638-3``,  ``638-2``,  ``638-1``,  ``490-7``,  ``490-6``,  ``490-5``,  ``490-4``,  ``490-3``,  ``490-2``,  ``490-1`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends parallel: :depends pillow: :depends python: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install last and update with:: mamba update last To create a new environment, run:: mamba create --name myenvname last with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/last: (see `last/tags`_ for valid values for ````) .. |downloads_last| image:: https://img.shields.io/conda/dn/bioconda/last.svg?style=flat :target: https://anaconda.org/bioconda/last :alt: (downloads) .. |docker_last| image:: https://quay.io/repository/biocontainers/last/status :target: https://quay.io/repository/biocontainers/last .. _`last/tags`: https://quay.io/repository/biocontainers/last?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/last/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/last/README.html