:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'lca' .. highlight: bash lca === .. conda:recipe:: lca :replaces_section_title: :noindex: LCA \- Lowest Common Ancestor calculation tool :homepage: https://github.com/hildebra/LCA/ :license: GPL-3.0-only :recipe: /`lca `_/`meta.yaml `_ .. conda:package:: lca |downloads_lca| |docker_lca| :versions: .. raw:: html
0.25-00.24-20.24-10.24-00.23-10.23-00.22-00.21-10.21-0 ``0.25-0``,  ``0.24-2``,  ``0.24-1``,  ``0.24-0``,  ``0.23-1``,  ``0.23-0``,  ``0.22-0``,  ``0.21-1``,  ``0.21-0``,  ``0.18-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install lca and update with:: mamba update lca To create a new environment, run:: mamba create --name myenvname lca with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/lca: (see `lca/tags`_ for valid values for ````) .. |downloads_lca| image:: https://img.shields.io/conda/dn/bioconda/lca.svg?style=flat :target: https://anaconda.org/bioconda/lca :alt: (downloads) .. |docker_lca| image:: https://quay.io/repository/biocontainers/lca/status :target: https://quay.io/repository/biocontainers/lca .. _`lca/tags`: https://quay.io/repository/biocontainers/lca?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lca/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/lca/README.html