:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ldblockshow' .. highlight: bash ldblockshow =========== .. conda:recipe:: ldblockshow :replaces_section_title: :noindex: a tool for showing linkage disequilibrium heatmaps from variant call format \(VCF\) files :homepage: https://github.com/BGI-shenzhen/LDBlockShow :license: MIT :recipe: /`ldblockshow `_/`meta.yaml `_ :links: biotools: :biotools:`ldblockshow` .. conda:package:: ldblockshow |downloads_ldblockshow| |docker_ldblockshow| :versions: .. raw:: html
1.40-31.40-21.40-11.40-01.38-01.37-01.36-01.35-01.34-0 ``1.40-3``,  ``1.40-2``,  ``1.40-1``,  ``1.40-0``,  ``1.38-0``,  ``1.37-0``,  ``1.36-0``,  ``1.35-0``,  ``1.34-0``,  ``1.33-0``,  ``1.32-0``,  ``1.31-0``,  ``1.27-0``,  ``1.25-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :depends perl-svg: :depends plink: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ldblockshow and update with:: mamba update ldblockshow To create a new environment, run:: mamba create --name myenvname ldblockshow with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ldblockshow: (see `ldblockshow/tags`_ for valid values for ````) .. |downloads_ldblockshow| image:: https://img.shields.io/conda/dn/bioconda/ldblockshow.svg?style=flat :target: https://anaconda.org/bioconda/ldblockshow :alt: (downloads) .. |docker_ldblockshow| image:: https://quay.io/repository/biocontainers/ldblockshow/status :target: https://quay.io/repository/biocontainers/ldblockshow .. _`ldblockshow/tags`: https://quay.io/repository/biocontainers/ldblockshow?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ldblockshow/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ldblockshow/README.html