:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'leviosam2' .. highlight: bash leviosam2 ========= .. conda:recipe:: leviosam2 :replaces_section_title: :noindex: Fast and accurate coordinate conversion between assemblies :homepage: https://github.com/milkschen/leviosam2 :documentation: https://github.com/milkschen/leviosam2/blob/main/workflow/README.md :license: MIT / MIT :recipe: /`leviosam2 `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btab396`, doi: :doi:`10.1101/2022.04.27.489683` .. conda:package:: leviosam2 |downloads_leviosam2| |docker_leviosam2| :versions: .. raw:: html
0.4.2-00.4.1-00.4.0-00.3.0-20.3.0-10.3.0-00.2.2-10.2.2-00.2.1-0 ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.0-2``,  ``0.3.0-1``,  ``0.3.0-0``,  ``0.2.2-1``,  ``0.2.2-0``,  ``0.2.1-0``,  ``0.2.0-0``,  ``0.1.0-0`` .. raw:: html
:depends htslib: ``>=1.18,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends python: ``>=3.6`` :depends sdsl-lite: ``>=2.1.1`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install leviosam2 and update with:: mamba update leviosam2 To create a new environment, run:: mamba create --name myenvname leviosam2 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/leviosam2: (see `leviosam2/tags`_ for valid values for ````) .. |downloads_leviosam2| image:: https://img.shields.io/conda/dn/bioconda/leviosam2.svg?style=flat :target: https://anaconda.org/bioconda/leviosam2 :alt: (downloads) .. |docker_leviosam2| image:: https://quay.io/repository/biocontainers/leviosam2/status :target: https://quay.io/repository/biocontainers/leviosam2 .. _`leviosam2/tags`: https://quay.io/repository/biocontainers/leviosam2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/leviosam2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/leviosam2/README.html