:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'locarna' .. highlight: bash locarna ======= .. conda:recipe:: locarna :replaces_section_title: :noindex: Multiple alignment of RNAs :homepage: https://s-will.github.io/LocARNA :license: GPL :recipe: /`locarna `_/`meta.yaml `_ :links: biotools: :biotools:`locarna`, doi: :doi:`10.1371/journal.pcbi.0030065` .. conda:package:: locarna |downloads_locarna| |docker_locarna| :versions: .. raw:: html
2.0.0-22.0.0-12.0.0-02.0.0RC10-12.0.0RC10-02.0.0RC8-22.0.0RC8-12.0.0RC8-02.0.0RC6-2 ``2.0.0-2``,  ``2.0.0-1``,  ``2.0.0-0``,  ``2.0.0RC10-1``,  ``2.0.0RC10-0``,  ``2.0.0RC8-2``,  ``2.0.0RC8-1``,  ``2.0.0RC8-0``,  ``2.0.0RC6-2``,  ``2.0.0RC6-1``,  ``2.0.0RC6-0``,  ``1.9.2.3-2``,  ``1.9.2.3-1``,  ``1.9.2.3-0``,  ``1.9.2-1``,  ``1.9.2-0``,  ``1.9.1-2``,  ``1.9.1-1``,  ``1.9.1-0``,  ``1.9.0-0``,  ``1.8.12-0``,  ``1.8.11-1``,  ``1.8.10-0``,  ``1.8.9-3``,  ``1.8.9-2``,  ``1.8.9-1``,  ``1.8.7-1``,  ``1.8.7-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends perl: :depends viennarna: ``>=2.5.1,<3`` :depends viennarna: ``>=2.6.4,<2.7.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install locarna and update with:: mamba update locarna To create a new environment, run:: mamba create --name myenvname locarna with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/locarna: (see `locarna/tags`_ for valid values for ````) .. |downloads_locarna| image:: https://img.shields.io/conda/dn/bioconda/locarna.svg?style=flat :target: https://anaconda.org/bioconda/locarna :alt: (downloads) .. |docker_locarna| image:: https://quay.io/repository/biocontainers/locarna/status :target: https://quay.io/repository/biocontainers/locarna .. _`locarna/tags`: https://quay.io/repository/biocontainers/locarna?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/locarna/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/locarna/README.html