:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'lsc' .. highlight: bash lsc === .. conda:recipe:: lsc :replaces_section_title: :noindex: LSC is a long read error correction tool that offers fast correction with high sensitivity and good accuracy. :homepage: https://www.healthcare.uiowa.edu/labs/au/LSC/ :license: Apache 2.0 :recipe: /`lsc `_/`meta.yaml `_ .. conda:package:: lsc |downloads_lsc| |docker_lsc| :versions: ``2.0-2``,  ``2.0-0`` :depends bowtie2: :depends perl: :depends python: ``<3`` :depends samtools: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install lsc and update with:: mamba update lsc To create a new environment, run:: mamba create --name myenvname lsc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/lsc: (see `lsc/tags`_ for valid values for ````) .. |downloads_lsc| image:: https://img.shields.io/conda/dn/bioconda/lsc.svg?style=flat :target: https://anaconda.org/bioconda/lsc :alt: (downloads) .. |docker_lsc| image:: https://quay.io/repository/biocontainers/lsc/status :target: https://quay.io/repository/biocontainers/lsc .. _`lsc/tags`: https://quay.io/repository/biocontainers/lsc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lsc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/lsc/README.html