:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ltr_retriever' .. highlight: bash ltr_retriever ============= .. conda:recipe:: ltr_retriever :replaces_section_title: :noindex: Sensitive and accurate identification of LTR retrotransposons :homepage: https://github.com/oushujun/LTR_retriever :license: GPL3 / GPL-3.0-or-later :recipe: /`ltr_retriever `_/`meta.yaml `_ :links: doi: :doi:`10.1104/pp.17.01310`, biotools: :biotools:`ltr_retriever` .. conda:package:: ltr_retriever |downloads_ltr_retriever| |docker_ltr_retriever| :versions: .. raw:: html
2.9.9-02.9.8-02.9.5-02.9.4-02.9.0-32.9.0-22.9.0-12.9.0-02.8.7-0 ``2.9.9-0``,  ``2.9.8-0``,  ``2.9.5-0``,  ``2.9.4-0``,  ``2.9.0-3``,  ``2.9.0-2``,  ``2.9.0-1``,  ``2.9.0-0``,  ``2.8.7-0``,  ``2.8-0`` .. raw:: html
:depends cd-hit: :depends libstdcxx-ng: :depends perl: :depends perl-text-soundex: :depends repeatmasker: ``<4.1.5`` :depends rmblast: :depends tesorter: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ltr_retriever and update with:: mamba update ltr_retriever To create a new environment, run:: mamba create --name myenvname ltr_retriever with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ltr_retriever: (see `ltr_retriever/tags`_ for valid values for ````) .. |downloads_ltr_retriever| image:: https://img.shields.io/conda/dn/bioconda/ltr_retriever.svg?style=flat :target: https://anaconda.org/bioconda/ltr_retriever :alt: (downloads) .. |docker_ltr_retriever| image:: https://quay.io/repository/biocontainers/ltr_retriever/status :target: https://quay.io/repository/biocontainers/ltr_retriever .. _`ltr_retriever/tags`: https://quay.io/repository/biocontainers/ltr_retriever?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ltr_retriever/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ltr_retriever/README.html