:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'lumpy-sv-minimal' .. highlight: bash lumpy-sv-minimal ================ .. conda:recipe:: lumpy-sv-minimal :replaces_section_title: :noindex: A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable :homepage: https://github.com/arq5x/lumpy-sv :license: MIT :recipe: /`lumpy-sv-minimal `_/`meta.yaml `_ .. conda:package:: lumpy-sv-minimal |downloads_lumpy-sv-minimal| |docker_lumpy-sv-minimal| :versions: ``0.3.1-0`` :depends htslib: ``>=1.10.2,<1.11.0a0`` :depends libgcc-ng: ``>=7.5.0`` :depends libstdcxx-ng: ``>=7.5.0`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install lumpy-sv-minimal and update with:: conda update lumpy-sv-minimal or use the docker container:: docker pull quay.io/biocontainers/lumpy-sv-minimal: (see `lumpy-sv-minimal/tags`_ for valid values for ````) .. |downloads_lumpy-sv-minimal| image:: https://img.shields.io/conda/dn/bioconda/lumpy-sv-minimal.svg?style=flat :target: https://anaconda.org/bioconda/lumpy-sv-minimal :alt: (downloads) .. |docker_lumpy-sv-minimal| image:: https://quay.io/repository/biocontainers/lumpy-sv-minimal/status :target: https://quay.io/repository/biocontainers/lumpy-sv-minimal .. _`lumpy-sv-minimal/tags`: https://quay.io/repository/biocontainers/lumpy-sv-minimal?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lumpy-sv-minimal/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/lumpy-sv-minimal/README.html